Publications

A list of original publications and manuscripts stemming from this project.  Page is updated as links become available.  References generated by http://mickschroeder.com/citation/ using PubMed ID (PMID).

List currently being generated (and formatted).

  • Cao K, Ryvkin P, Johnson FB. Computational detection and analysis of sequences with duplex-derived interstrand G-quadruplex forming potential. Methods. 2012;57(1):3-10.
  • Tang Y, Puri A, Ricketts MD, et al. Identification of an ubinuclein 1 region required for stability and function of the human HIRA/UBN1/CABIN1/ASF1a histone H3.3 chaperone complex. Biochemistry. 2012;51(12):2366-77.
  • Yuan H, Rossetto D, Mellert H, et al. MYST protein acetyltransferase activity requires active site lysine autoacetylation. EMBO J. 2012;31(1):58-70.
  • Ray-gallet D, Woolfe A, Vassias I, et al. Dynamics of histone H3 deposition in vivo reveal a nucleosome gap-filling mechanism for H3.3 to maintain chromatin integrity. Mol Cell. 2011;44(6):928-41.
  • Rai TS, Puri A, Mcbryan T, et al. Human CABIN1 is a functional member of the human HIRA/UBN1/ASF1a histone H3.3 chaperone complex. Mol Cell Biol. 2011;31(19):4107-18.
  • Chavez A, Agrawal V, Johnson FB. Homologous recombination-dependent rescue of deficiency in the structural maintenance of chromosomes (Smc) 5/6 complex. J Biol Chem. 2011;286(7):5119-25.
  • Tang Y, Holbert MA, Delgoshaie N, et al. Structure of the Rtt109-AcCoA/Vps75 complex and implications for chaperone-mediated histone acetylation. Structure. 2011;19(2):221-31.
  • Kreiling JA, Tamamori-adachi M, Sexton AN, et al. Age-associated increase in heterochromatic marks in murine and primate tissues. Aging Cell. 2011;10(2):292-304.
  • Smith JS, Chen Q, Yatsunyk LA, et al. Rudimentary G-quadruplex-based telomere capping in Saccharomyces cerevisiae. Nat Struct Mol Biol. 2011;18(4):478-85.
  • Johnson JE, Cao K, Ryvkin P, Wang LS, Johnson FB. Altered gene expression in the Werner and Bloom syndromes is associated with sequences having G-quadruplex forming potential. Nucleic Acids Res. 2010;38(4):1114-22.
  • Kozak ML, Chavez A, Dang W, et al. Inactivation of the Sas2 histone acetyltransferase delays senescence driven by telomere dysfunction. EMBO J. 2010;29(1):158-70.
  • Chavez A, George V, Agrawal V, Johnson FB. Sumoylation and the structural maintenance of chromosomes (Smc) 5/6 complex slow senescence through recombination intermediate resolution. J Biol Chem. 2010;285(16):11922-30.
  • Ryvkin P, Hershman SG, Wang LS, Johnson FB. Computational approaches to the detection and analysis of sequences with intramolecular G-quadruplex forming potential. Methods Mol Biol. 2010;608:39-50.
  • Smith JS, Johnson FB. Isolation of G-quadruplex DNA using NMM-sepharose affinity chromatography. Methods Mol Biol. 2010;608:207-21.
  • Sanders, BD, Jackson B, Marmorstein R. “Structural basis for sirtuin function: What we know and what we don’t.” (2009) Biochem. Biophysics Acta, 1804, 1604-16.
  • Sanders BD, Jackson B, Brent M, et al. Identification and characterization of novel sirtuin inhibitor scaffolds. Bioorg Med Chem. 2009;17(19):7031-41.
  • Banumathy G, Somaiah N, Zhang R, et al. Human UBN1 is an ortholog of yeast Hpc2p and has an essential role in the HIRA/ASF1a chromatin-remodeling pathway in senescent cells. Mol Cell Biol. 2009;29(3):758-70.
  • Chavez A, Tsou AM, Johnson FB. Telomeres do the (un)twist: helicase actions at chromosome termini. Biochim Biophys Acta. 2009;1792(4):329-40.
  • Adams PD, Enders GH. Wnt-signaling and senescence: A tug of war in early neoplasia?. Cancer Biol Ther. 2008;7(11):1706-11.
  • Sedivy JM, Banumathy G, Adams PD. Aging by epigenetics–a consequence of chromatin damage?. Exp Cell Res. 2008;314(9):1909-17.
  • Tang Y, Poustovoitov MV, Zhao K, et al. Structure of a human ASF1a-HIRA complex and insights into specificity of histone chaperone complex assembly. Nat Struct Mol Biol. 2006;13(10):921-9.
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